article-journal

Accurate isoform discovery with IsoQuant using long reads

Andrey D Prjibelski, Alla Mikheenko, Anoushka Joglekar, Alexander Smetanin, Julien Jarroux, Alla L Lapidus, Hagen U Tilgner

PolyGR and polyPR knock-in mice reveal a conserved neuroprotective extracellular matrix signature in C9orf72 ALS/FTD neurons

Carmelo Milioto, Mireia Carcole, Ashling Giblin, Rachel Coneys, Olivia Attrebi, Mhoriam Ahmed, Samuel S Harris, Byung Il Lee, Mengke Yang, Raja S Nirujogi, et al

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Francisco J Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sı́lvia Carbonell-Sala, Brian Williams, Jane E Loveland, Maite De Maria, Matthew S Adams, Gabriela Balderrama-Gutierrez, et al

The complete sequence of a human Y chromosome

Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Nicolas Altemose, Paul W Hook, Sergey Koren, Mikko Rautiainen, Ivan A Alexandrov, et al

WebQUAST: online evaluation of genome assemblies

Alla Mikheenko, Vladislav Saveliev, Pascal Hirsch, Alexey Gurevich

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

Ann M Mc Cartney, Kishwar Shafin, Michael Alonge, Andrey V Bzikadze, Giulio Formenti, Arkarachai Fungtammasan, Kerstin Howe, Chirag Jain, Sergey Koren, Glennis A Logsdon, et al

Complete genomic and epigenetic maps of human centromeres

Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, et al

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

Andrey V Bzikadze, Alla Mikheenko, Pavel A Pevzner

NPvis: An Interactive Visualizer of Peptidic Natural Product--MS/MS Matches

Olga Kunyavskaya, Alla Mikheenko, Alexey Gurevich

Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

Alla Mikheenko, Andrey D Prjibelski, Anoushka Joglekar, Hagen U Tilgner