Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Nicolas Altemose, Paul W Hook, Sergey Koren, Mikko Rautiainen, Ivan A Alexandrov, et al
(2023).
The complete sequence of a human Y chromosome.
Nature.
Francisco J Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sı́lvia Carbonell-Sala, Brian Williams, Jane E Loveland, Maite De Maria, Matthew S Adams, Gabriela Balderrama-Gutierrez, et al
(2023).
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
bioRxiv.
Carmelo Milioto, Mireia Carcole, Ashling Giblin, Rachel Coneys, Olivia Attrebi, Mhoriam Ahmed, Samuel S Harris, Byung Il Lee, Mengke Yang, Raja S Nirujogi, et al
(2023).
PolyGR and polyPR knock-in mice reveal a conserved neuroprotective extracellular matrix signature in C9orf72 ALS/FTD neurons.
bioRxiv.
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, et al
(2022).
The complete sequence of a human genome.
Science.
Simon A Hardwick, Wen Hu, Anoushka Joglekar, Li Fan, Paul G Collier, Careen Foord, Jennifer Balacco, Samantha Lanjewar, Maureen McGuirk Sampson, Frank Koopmans, et al
(2022).
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.
Nature biotechnology.
Nicolas Altemose, Glennis A Logsdon, Andrey V Bzikadze, Pragya Sidhwani, Sasha A Langley, Gina V Caldas, Savannah J Hoyt, Lev Uralsky, Fedor D Ryabov, Colin J Shew, et al
(2022).
Complete genomic and epigenetic maps of human centromeres.
Science.
Ann M Mc Cartney, Kishwar Shafin, Michael Alonge, Andrey V Bzikadze, Giulio Formenti, Arkarachai Fungtammasan, Kerstin Howe, Chirag Jain, Sergey Koren, Glennis A Logsdon, et al
(2022).
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.
Nature methods.
Glennis A Logsdon, Mitchell R Vollger, PingHsun Hsieh, Yafei Mao, Mikhail A Liskovykh, Sergey Koren, Sergey Nurk, Ludovica Mercuri, Philip C Dishuck, Arang Rhie, et al
(2021).
The structure, function and evolution of a complete human chromosome 8.
Nature.
Liu Cao, Alexey Gurevich, Kelsey L Alexander, C Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto-Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, et al
(2019).
MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities.
Cell systems.
Hosein Mohimani, Alexey Gurevich, Kelsey L Alexander, C Benjamin Naman, Tiago Leão, Evgenia Glukhov, Nathan A Moss, Tal Luzzatto-Knaan, Fernando Vargas, Louis-Felix Nothias, et al
(2017).
MetaRiPPquest: a peptidogenomics approach for the discovery of ribosomally synthesized and post-translationally modified peptides.
BioRxiv.